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Summary Period: 2005-10-10 to 2005-06-24 (Commits 22-71 of 71)

schmidt 2005-10-10 11:03

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49 lines of code changed in:

• utils/src/de/tum/binfo/mapper: MapBlast.java (+49 -57)

schmidt 2005-10-06 12:29

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24 lines of code changed in:

• utils/src/de/tum/binfo/RemoteQueries: FastaSeq.java (+24 -3)

schmidt 2005-10-02 16:22

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66 lines of code changed in:

• utils/src/de/tum/binfo/utils: ValidLocation.java (+66)

schmidt 2005-10-01 21:11

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14 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+14)

schmidt 2005-09-30 20:23

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19 lines of code changed in:

• utils/src/de/tum/binfo/dbDialog: DBProperties.java (+19 -2)

schmidt 2005-09-30 20:03

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53 lines of code changed in:

• utils/src/de/tum/binfo/iter: TupelIter.java (new 53)

schmidt 2005-09-30 19:32

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5 lines of code changed in:

• utils/src/de/tum/binfo/mapper: MapBlast.java (+5)

schmidt 2005-09-30 16:58

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1262 lines of code changed in:

• utils/src/de/tum/binfo/dbDialog: DBDialog.java (new 976), DBDialogTest.java (new 23), DBProperties.java (new 114), DialogThread.java (new 134)
• utils/src/de/tum/binfo/mapper/workiter: MapEqualTotalIterator.java (+15 -2)

schmidt 2005-09-30 10:55

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5 lines of code changed in:

• utils/src/de/tum/binfo/mapper: MapToSimapIdsByMd5.java (+5 -2)

schmidt 2005-09-29 18:45

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350 lines of code changed in:

• utils/src/de/tum/binfo/mapper: IMapper.java (+5 -1), MapBlast.java (+33 -3), MapEqualTotal.java (+29 -83), MapToSimapIdsByMd5.java (+5 -1)
• utils/src/de/tum/binfo/mapper/workiter: MapBlastIterator.java (+214 -201), MapEqualTotalIterator.java (+64 -59), MapToSimapIdsByMd5Itertaor.java (-6)

schmidt 2005-09-28 15:03

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15 lines of code changed in:

• utils/src/de/tum/binfo/MetaDb: DbTable.java (+6 -6), TableBuilder.java (+3 -3)
• utils/src/de/tum/binfo/utils: Db.java (+3 -3), JarReader.java (+3 -3)

schmidt 2005-09-21 12:43

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3 lines of code changed in:

• utils/src/de/tum/binfo/utils: Saving.java (+3)

schmidt 2005-09-20 18:34

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27 lines of code changed in:

• utils/src/de/tum/binfo/utils: Gaga.java (+26 -26), StringUtils.java (+1 -1)

schmidt 2005-09-19 17:11

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49 lines of code changed in:

• utils/src/de/tum/binfo/utils: Saving.java (+49)

schmidt 2005-09-12 18:10

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1 lines of code changed in:

• utils/src/de/tum/binfo/mapper/workiter: MapToSimapIdsByMd5Itertaor.java (+1 -1)

schmidt 2005-09-07 18:18

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202 lines of code changed in:

• utils/src/de/tum/binfo/mapper/workiter: MapBlastIterator.java (+202 -212)

schmidt 2005-09-07 14:01

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29 lines of code changed in:

• utils/src/de/tum/binfo/iter: DbIterator.java (+29 -6)

schmidt 2005-08-31 16:50

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673 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+673 -648)

schmidt 2005-08-20 14:19

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38 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+38)

schmidt 2005-08-20 10:19

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1 lines of code changed in:

• utils/src/de/tum/binfo/mapper: MapBlast.java (+1 -75)

schmidt 2005-08-19 18:17

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7 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+2), StringUtils.java (+5)

schmidt 2005-08-19 14:09

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0 lines of code changed in:

• utils/src/de/tum/binfo/iter/tests: TestGenBank.java (del)

schmidt 2005-08-19 13:41

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0 lines of code changed in:

• utils/src/de/tum/binfo/mapper/test: TestMd5.java (del)

schmidt 2005-08-19 13:25

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377 lines of code changed in:

• utils/src/de/tum/binfo/RemoteQueries: ExampleSeqHoundUsage.java (new 40), GetGenebankSeqsIter.java (+1 -1), QueryEbiSRS2.java (+66 -1), TestSeqHound.java (del)
• utils/src/de/tum/binfo/dbstorage: DbSaver.java (new 269)
• utils/src/de/tum/binfo/iter/tests: TestGenBank.java (+1)
• utils/src/de/tum/binfo/mapper: DbSaver.java (del)

schmidt 2005-08-18 19:13

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44 lines of code changed in:

• utils/src/de/tum/binfo/utils: RuntimeChecker.java (new 44)

schmidt 2005-08-10 12:36

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2 lines of code changed in:

• utils/src/de/tum/binfo/iter/tests: TestGenBank.java (+2 -2)

schmidt 2005-08-09 19:07

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88 lines of code changed in:

• utils/src/de/tum/binfo/iter/tests: TestGenBank.java (+29 -12)
• utils/src/de/tum/binfo/mapper: DbSaver.java (+40 -6)
• utils/src/de/tum/binfo/mapper/workiter: MapBlastIterator.java (+19)

schmidt 2005-08-09 17:34

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83 lines of code changed in:

• utils/src/de/tum/binfo/RemoteQueries: GetGenebankSeqsIter.java (+8 -4), TestSeqHound.java (new)
• utils/src/de/tum/binfo/iter: FileLineIter.java (+39)
• utils/src/de/tum/binfo/iter/tests: TestGenBank.java (new 12)
• utils/src/de/tum/binfo/mapper: DbSaver.java (new 6), MapBlast.java (+2)
• utils/src/de/tum/binfo/mapper/workiter: MapBlastIterator.java (+16 -12)

schmidt 2005-08-09 15:07

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43 lines of code changed in:

• utils/src/de/tum/binfo/mapper: IMapper.java (+16 -1), MapBlast.java (+11), MapEqualTotal.java (+8), MapToSimapIdsByMd5.java (+8)

schmidt 2005-08-09 14:58

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414 lines of code changed in:

• utils/src/de/tum/binfo/RemoteQueries: GetGenebankSeqsIter.java (new 124)
• utils/src/de/tum/binfo/iter: DbIterator.java (+6 -2), FileLineIter.java (new 111)
• utils/src/de/tum/binfo/mapper: GenbankIds.java (+4 -3), QueryGenebank.java (del)
• utils/src/de/tum/binfo/utils: ValidLocation.java (+169 -171)

schmidt 2005-08-09 11:16

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1667 lines of code changed in:

• utils/src/de/tum/binfo/RemoteQueries: ExtractDatabaseTypes.java (+1)
• utils/src/de/tum/binfo/iter: ArrayIterator.java (new 76), DbIterator.java (new 164), FlatFileIterator.java (new 183), IteratorRewind.java (new 20), readme.txt (new 2)
• utils/src/de/tum/binfo/iter/tests: TestArrayIterator.java (new 55), TestDbIterator.java (new 64)
• utils/src/de/tum/binfo/mapper: GenbankIds.java (new 3), IMapper.java (new 53), MapBlast.java (new 304), MapEqualTotal.java (new 143), MapToSimapIdsByMd5.java (new 93), QueryGenebank.java (new)
• utils/src/de/tum/binfo/mapper/test: TestMd5.java (new)
• utils/src/de/tum/binfo/mapper/workiter: MapBlastIterator.java (new 220), MapEqualTotalIterator.java (new 118), MapToSimapIdsByMd5Itertaor.java (new 168)

schmidt 2005-08-09 11:09

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1991 lines of code changed in:

• utils/src/de/tum/binfo/RemoteQueries: ExtractDatabaseTypes.java (new 53), FastaSeq.java (new 182), FuzzyHelper.java (new 320), QueryEbiSRS.java (new 298), QueryEbiSRS2.java (new 337), QueryExpasy.java (new 150), SwissProtCheck.java (new 85)
• utils/src/de/tum/binfo/RemoteQueries/Exceptions: ParserError.java (new 37), RetriesExceeded.java (new 30), ServerMessage.java (new 37)
• utils/src/de/tum/binfo/RemoteQueries/scripts: GetSwissProtSequences.java (new 174), GetSwissProtSequencesComplex.java (new 221), TestForAmbigiousSwissProtAcc.java (new 66)
• utils/src/de/tum/binfo/utils: Samples.java (+1)

schmidt 2005-08-07 16:50

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0 lines of code changed in:

• utils/src/de/tum/binfo/utils: ArrayIterator.java (del), DbIterator.java (del), FileFastaIterator.java (del), IteratorRewind.java (del), TestArrayIterator.java (del), TestDbIterator.java (del)

schmidt 2005-08-03 16:10

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2 lines of code changed in:

• utils/src/de/tum/binfo/utils: ArrayConverter.java (+2 -1)

schmidt 2005-08-01 17:10

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26 lines of code changed in:

• utils/src/de/tum/binfo/utils: DbIterator.java (+26 -3)

schmidt 2005-08-01 14:03

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1748 lines of code changed in:

• utils/src/de/tum/binfo/utils: Array.java (new 932), ArrayConverter.java (new 113), ArrayIterator.java (new), DbIterator.java (new 3), FileFastaIterator.java (new), IteratorRewind.java (new), MirroredDbsWzw.java (new 44), Samples.java (+43 -84), Sorting.java (new 613), TestArrayIterator.java (new), TestDbIterator.java (new)

schmidt 2005-07-26 13:09

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165 lines of code changed in:

• utils/src/de/tum/binfo/utils: Samples.java (new 165)

schmidt 2005-07-26 10:00

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1 lines of code changed in:

• utils/src/de/tum/binfo/utils: ValidLocation.java (+1 -1)

schmidt 2005-07-25 19:24

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61 lines of code changed in:

• utils/src/de/tum/binfo/utils: SimpleHashBoolean.java (new 61)

schmidt 2005-07-25 10:44

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87 lines of code changed in:

• utils/src: JarInfo.java (new 87)

schmidt 2005-07-23 16:35

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24 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+24)

schmidt 2005-07-19 16:32

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4 lines of code changed in:

• utils/src/de/tum/binfo/MetaDb: DbToolkit.java (+1 -1)
• utils/src/de/tum/binfo/utils: ExampleFileFilter.java (+2 -2), ValidLocation.java (+1)

schmidt 2005-07-14 14:18

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3 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+3 -1)

schmidt 2005-07-14 13:54

DB static version now completely with additional connection support

127 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+127 -47)

schmidt 2005-07-14 11:23

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16 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+16 -8)

schmidt 2005-07-14 11:19

db extended

51 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+51 -27)

schmidt 2005-06-30 14:56

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639 lines of code changed in:

• utils/src/de/tum/binfo/utils: ExampleFileFilter.java (new 275), ExampleFileView.java (new 201), XmlSerialize.java (+163 -13)

schmidt 2005-06-30 10:48

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225 lines of code changed in:

• utils/src/de/tum/binfo/utils: Saving.java (new 178), XmlSerialize.java (new 46)

schmidt 2005-06-28 17:13

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89 lines of code changed in:

• utils/src/de/tum/binfo/utils: SimpleHashDouble.java (new 74), SimpleHashFloat.java (+8), SimpleHashInteger.java (+7)

schmidt 2005-06-24 17:18

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14 lines of code changed in:

• utils/src/de/tum/binfo/utils: Db.java (+14 -9)

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