PROMPT - Protein Mapping and Comparison Tool

This program can compare 2 or more protein sets by a multitude of algorithms. Depending on your input you can compare a wide range of protein features like molecular weight, isoelectric point, enzyme classifications up to protein function or structural classes.

Another powerful feature is the possibilty to map any GenBank, EMBL, Swiss-Prot/UniProt or PEDANT codes with a single mouse-click. Just load your identifiers with the appropriate input modul and choose one of the mapping algorithms from the mapping menu.

As data input  you can use FASTA, EMBL, GenBank, Swiss-Prot and UniProt XML files. Moreover you can just supply a list of Swiss-Prot/UniProt primary accession numbers or GenBank identifiers, the corresponding protein information will be downloaded automatically. Additionally database data integration adapters allow to facilitate the rich PEDANT annotations. Moreover any numeric or symbolic data (like keywords) can be compared without considering semantics by using the GenericXML data format. As part of all comparisons exhaustive statistical tests are performed to test for  statistical significance. Additionally any tests can be applied via the graphical user interface. 

Click on the arrow to get an overview of the GUI   

Click here to follow a demonstration walk-through