Creating a plot (visualisation)



After creating a result from the raw data, you may want to visualise your result. The Bioinformatic Studio uses the R software to create high quality plots. So it is necessary for a visualisation to have a local R installation.
  1. Right-click the result in the result table to open the popup menu.
  2. Select Visualize
In this submenu there will be a list of visualisations which are connected to the engine result. (See Menu Customizer for create a connection). There will be two visualisations:
  1. Select AaDistibutionHistogram
AaDistributionHistogram will get you a histogram with the frequency of an amino acid in a sequence and the number of sequences where the amino acid occures with the given frequency. So you have to choose an amino acid and a dataset to create this plot.
  1. Select the amin acid for which you want the frequency
  2. Select the dataset you want to use
Again, a progressbar will appear while the Bioinformatik Studio is performing the visualisation by sending the data to the R software which creates the plot. When the plot is ready, it will be shown in a seperate frame.
A right-click in the plot frame will open a popup menu with the following content: