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PROMPT: Protein Mapping and Comparison Tool
PROMPT is a platform independent system for retrieval, analysis, mapping and comparison of protein sets. It allows easy mapping of different types of sequence identifiers, automatical data retrieval and integration, a multitude of analysis and comparison algorithms and a full-featured easy to use graphical user interface (GUI) application with an integrated help-system. Moreover exhaustive statistical tests are conducted in appropriate cases automatically or could be performed manually. Furthermore all analysis results can be viewed or visualized with one mouse-click and exported in various formats e.g. to Microsoft Excel. Additionally all methods can be used easily in your own Java code or with powerful beanshell scripting in own scripts, a pipeline or grid systems.
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New: Web based Fast Mapping to large databases by F. Hager
Publications that cite PROMPT
Protein abundance profiling of the Escherichia coli cytosol
Ishihama Y, Schmidt T, Rappsilber J, et al.
BMC GENOMICS Volume: 9 Article Number: 102 Published: FEB 27 2008
OREST - Online resource for EST analysis
Wägele B, Schmidt T, Ruepp A, Mewes HW
NUCLEIC ACIDS RESEARCH, in press, 2008
An approach to handling and interpretation of ambiguous data in transcriptome
and proteome comparisons
Irmler M, Hartl D, Schmidt T, et al.
PROTEOMICS Volume: 8 Issue: 6 Pages: 1165-1169 Published: MAR 2008
The fungus Ustilago maydis and humans share disease-related proteins
that are not found in Saccharomyces cerevisiae
Munsterkotter M, Steinberg G
BMC GENOMICS Volume: 8 Article Number: 473 Published: DEC 20 2007
SIMAPstructuring the network of protein similarities
Rattei T, Tischler P, Arnold R, et al.
NUCLEIC ACIDS RESEARCH Volume: 36 Special Issue: Sp. Iss. SI Pages:
D289-D292 Published: JAN 2008
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein
identifiers across multiple source databases
Cote RG, Jones P, Martens L, et al.
BMC BIOINFORMATICS Volume: 8 Article Number: 401 Published: OCT 18
2007
Bioinformatics for study of autoimmunity.
Petrovsky N, Brusic V.
AUTOIMMUNITY. 2006 Dec;39(8):635-43.
PEDANT genome database: 10 years online.
Riley ML, Schmidt T, Artamonova II, Wagner C, Volz A, Heumann K, Mewes
HW, Frishman D.
NUCLEIC ACIDS RESEARCH 2006 Dec 5
Web-version, PDF-screen, PDF-print, About the journal
TOOLbox - PROMPT for comparisons,
Vol. 5, No. 9: September 2006; pp 2072–2073;
JOURNAL OF PROTEOME RESEARCH (2006)
Web-version, PDF-screen, PDF-print, About the journal
PROMPT reference
Schmidt, T., Frishman, D. (2006),
PROMPT: a protein mapping and comparison
tool,
BMC Bioinformatics 2006, 7:331; Link